Male
Joe Flanigan can be seen using the following weapons in the following films and television series:
| Character | Firearm | Notes |
|---|---|---|
| Deputy Doug Brady | Single Action Army | . |
| Character | Firearm | Notes |
|---|---|---|
| Major/Lt. Colonel John Sheppard | Beretta 92FS | - |
| Major/Lt. Colonel John Sheppard | M1911A1 Government | Nickel finish and pearl grips |
| Major/Lt. Colonel John Sheppard | Para-Ordnance P-14 Limited | Early model with vertical slide serrations |
| Major/Lt. Colonel John Sheppard | FN P90 | Surefire Universal Weaponlight |
| Major/Lt. Colonel John Sheppard | Heckler & Koch G36K | RIS foregrip, Surefire Universal Weaponlight |
| Major/Lt. Colonel John Sheppard | M4/M4A1 Carbine | AN/PVS-17 night-vision scope |
| Major/Lt. Colonel John Sheppard | Daewoo K3 | Mocked up as an M249 Para |
| Major/Lt. Colonel John Sheppard | Mossberg 500 | - |
| Major/Lt. Colonel John Sheppard | Taser | - |